Genome expansion of Arabis alpina linked with retrotransposition and reduced symmetric DNA methylation.
Identifieur interne : 002D54 ( Main/Exploration ); précédent : 002D53; suivant : 002D55Genome expansion of Arabis alpina linked with retrotransposition and reduced symmetric DNA methylation.
Auteurs : Eva-Maria Willing [Allemagne] ; Vimal Rawat [Allemagne] ; Terezie Mandáková [République tchèque] ; Florian Maumus [France] ; Geo Velikkakam James [Allemagne] ; Karl J V. Nordström [Allemagne] ; Claude Becker [Allemagne] ; Norman Warthmann [Allemagne] ; Claudia Chica [France] ; Bogna Szarzynska [France] ; Matthias Zytnicki [France] ; Maria C. Albani [Allemagne] ; Christiane Kiefer [Allemagne] ; Sara Bergonzi [Allemagne] ; Loren Castaings [Allemagne] ; Julieta L. Mateos [Allemagne] ; Markus C. Berns [Allemagne] ; Nora Bujdoso [Allemagne] ; Thomas Piofczyk [Allemagne] ; Laura De Lorenzo [Espagne] ; Cristina Barrero-Sicilia [Espagne] ; Isabel Mateos [Espagne] ; Mathieu Piednoël [Allemagne] ; Jörg Hagmann [Allemagne] ; Romy Chen-Min-Tao [France] ; Raquel Iglesias-Fernández [Espagne] ; Stephan C. Schuster [États-Unis] ; Carlos Alonso-Blanco [Espagne] ; François Roudier [France] ; Pilar Carbonero [Espagne] ; Javier Paz-Ares [Espagne] ; Seth J. Davis [Allemagne] ; Ales Pecinka [Allemagne] ; Hadi Quesneville [France] ; Vincent Colot [France] ; Martin A. Lysak [République tchèque] ; Detlef Weigel [Allemagne] ; George Coupland [Allemagne] ; Korbinian Schneeberger [Allemagne]Source :
- Nature plants [ 2055-0278 ] ; 2015.
Abstract
Despite evolutionary conserved mechanisms to silence transposable element activity, there are drastic differences in the abundance of transposable elements even among closely related plant species. We conducted a de novo assembly for the 375 Mb genome of the perennial model plant, Arabis alpina. Analysing this genome revealed long-lasting and recent transposable element activity predominately driven by Gypsy long terminal repeat retrotransposons, which extended the low-recombining pericentromeres and transformed large formerly euchromatic regions into repeat-rich pericentromeric regions. This reduced capacity for long terminal repeat retrotransposon silencing and removal in A. alpina co-occurs with unexpectedly low levels of DNA methylation. Most remarkably, the striking reduction of symmetrical CG and CHG methylation suggests weakened DNA methylation maintenance in A. alpina compared with Arabidopsis thaliana. Phylogenetic analyses indicate a highly dynamic evolution of some components of methylation maintenance machinery that might be related to the unique methylation in A. alpina.
DOI: 10.1038/nplants.2014.23
PubMed: 27246759
Affiliations:
- Allemagne, Espagne, France, République tchèque, États-Unis
- Communauté de Madrid, District de Cologne, Moravie, Pennsylvanie, Rhénanie-du-Nord-Westphalie, Île-de-France
- Brno, Cologne, Madrid, Paris, University Park (Pennsylvanie)
- Université d'État de Pennsylvanie
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Nordström</name><affiliation wicri:level="3"><nlm:affiliation>Department of Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Carl-von-Linné Weg 10, D-50829 Cologne, Germany.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>Department of Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Carl-von-Linné Weg 10, D-50829 Cologne</wicri:regionArea><placeName><region type="land" nuts="1">Rhénanie-du-Nord-Westphalie</region><region type="district" nuts="2">District de Cologne</region><settlement type="city">Cologne</settlement></placeName></affiliation></author><author><name sortKey="Becker, Claude" sort="Becker, Claude" uniqKey="Becker C" first="Claude" last="Becker">Claude Becker</name><affiliation wicri:level="1"><nlm:affiliation>Department of Molecular Biology, Max Planck Institute for Developmental Biology, 72076 Tübingen, Germany.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>Department of Molecular Biology, Max Planck Institute for Developmental Biology, 72076 Tübingen</wicri:regionArea><wicri:noRegion>72076 Tübingen</wicri:noRegion><wicri:noRegion>72076 Tübingen</wicri:noRegion><wicri:noRegion>72076 Tübingen</wicri:noRegion></affiliation></author><author><name sortKey="Warthmann, Norman" sort="Warthmann, Norman" uniqKey="Warthmann N" first="Norman" last="Warthmann">Norman Warthmann</name><affiliation wicri:level="1"><nlm:affiliation>Department of Molecular Biology, Max Planck Institute for Developmental Biology, 72076 Tübingen, Germany.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>Department of Molecular Biology, Max Planck Institute for Developmental Biology, 72076 Tübingen</wicri:regionArea><wicri:noRegion>72076 Tübingen</wicri:noRegion><wicri:noRegion>72076 Tübingen</wicri:noRegion><wicri:noRegion>72076 Tübingen</wicri:noRegion></affiliation></author><author><name sortKey="Chica, Claudia" sort="Chica, Claudia" uniqKey="Chica C" first="Claudia" last="Chica">Claudia Chica</name><affiliation wicri:level="3"><nlm:affiliation>Institut de Biologie de l'Ecole Normale Supérieure (IBENS), Centre National de la Recherche Scientifique (CNRS) UMR 8197 and Institut National de la Santé et de la Recherche Médicale (INSERM) U 1024, Paris, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>Institut de Biologie de l'Ecole Normale Supérieure (IBENS), Centre National de la Recherche Scientifique (CNRS) UMR 8197 and Institut National de la Santé et de la Recherche Médicale (INSERM) U 1024, Paris</wicri:regionArea><placeName><region type="region">Île-de-France</region><region type="old region">Île-de-France</region><settlement type="city">Paris</settlement></placeName></affiliation></author><author><name sortKey="Szarzynska, Bogna" sort="Szarzynska, Bogna" uniqKey="Szarzynska B" first="Bogna" last="Szarzynska">Bogna Szarzynska</name><affiliation wicri:level="3"><nlm:affiliation>Institut de Biologie de l'Ecole Normale Supérieure (IBENS), Centre National de la Recherche Scientifique (CNRS) UMR 8197 and Institut National de la Santé et de la Recherche Médicale (INSERM) U 1024, Paris, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>Institut de Biologie de l'Ecole Normale Supérieure (IBENS), Centre National de la Recherche Scientifique (CNRS) UMR 8197 and Institut National de la Santé et de la Recherche Médicale (INSERM) U 1024, Paris</wicri:regionArea><placeName><region type="region">Île-de-France</region><region type="old region">Île-de-France</region><settlement type="city">Paris</settlement></placeName></affiliation></author><author><name sortKey="Zytnicki, Matthias" sort="Zytnicki, Matthias" uniqKey="Zytnicki M" first="Matthias" last="Zytnicki">Matthias Zytnicki</name><affiliation wicri:level="1"><nlm:affiliation>INRA, UR1164 URGI-Research Unit in Genomics-Info, INRA de Versailles-Grignon, Route de Saint-Cyr, Versailles 78026, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>INRA, UR1164 URGI-Research Unit in Genomics-Info, INRA de Versailles-Grignon, Route de Saint-Cyr, Versailles 78026</wicri:regionArea><wicri:noRegion>78026</wicri:noRegion><wicri:noRegion>78026</wicri:noRegion></affiliation></author><author><name sortKey="Albani, Maria C" sort="Albani, Maria C" uniqKey="Albani M" first="Maria C" last="Albani">Maria C. Albani</name><affiliation wicri:level="3"><nlm:affiliation>Department of Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Carl-von-Linné Weg 10, D-50829 Cologne, Germany.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>Department of Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Carl-von-Linné Weg 10, D-50829 Cologne</wicri:regionArea><placeName><region type="land" nuts="1">Rhénanie-du-Nord-Westphalie</region><region type="district" nuts="2">District de Cologne</region><settlement type="city">Cologne</settlement></placeName></affiliation></author><author><name sortKey="Kiefer, Christiane" sort="Kiefer, Christiane" uniqKey="Kiefer C" first="Christiane" last="Kiefer">Christiane Kiefer</name><affiliation wicri:level="3"><nlm:affiliation>Department of Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Carl-von-Linné Weg 10, D-50829 Cologne, Germany.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>Department of Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Carl-von-Linné Weg 10, D-50829 Cologne</wicri:regionArea><placeName><region type="land" nuts="1">Rhénanie-du-Nord-Westphalie</region><region type="district" nuts="2">District de Cologne</region><settlement type="city">Cologne</settlement></placeName></affiliation></author><author><name sortKey="Bergonzi, Sara" sort="Bergonzi, Sara" uniqKey="Bergonzi S" first="Sara" last="Bergonzi">Sara Bergonzi</name><affiliation wicri:level="3"><nlm:affiliation>Department of Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Carl-von-Linné Weg 10, D-50829 Cologne, Germany.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>Department of Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Carl-von-Linné Weg 10, D-50829 Cologne</wicri:regionArea><placeName><region type="land" nuts="1">Rhénanie-du-Nord-Westphalie</region><region type="district" nuts="2">District de Cologne</region><settlement type="city">Cologne</settlement></placeName></affiliation></author><author><name sortKey="Castaings, Loren" sort="Castaings, Loren" uniqKey="Castaings L" first="Loren" last="Castaings">Loren Castaings</name><affiliation wicri:level="3"><nlm:affiliation>Department of Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Carl-von-Linné Weg 10, D-50829 Cologne, Germany.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>Department of Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Carl-von-Linné Weg 10, D-50829 Cologne</wicri:regionArea><placeName><region type="land" nuts="1">Rhénanie-du-Nord-Westphalie</region><region type="district" nuts="2">District de Cologne</region><settlement type="city">Cologne</settlement></placeName></affiliation></author><author><name sortKey="Mateos, Julieta L" sort="Mateos, Julieta L" uniqKey="Mateos J" first="Julieta L" last="Mateos">Julieta L. Mateos</name><affiliation wicri:level="3"><nlm:affiliation>Department of Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Carl-von-Linné Weg 10, D-50829 Cologne, Germany.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>Department of Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Carl-von-Linné Weg 10, D-50829 Cologne</wicri:regionArea><placeName><region type="land" nuts="1">Rhénanie-du-Nord-Westphalie</region><region type="district" nuts="2">District de Cologne</region><settlement type="city">Cologne</settlement></placeName></affiliation></author><author><name sortKey="Berns, Markus C" sort="Berns, Markus C" uniqKey="Berns M" first="Markus C" last="Berns">Markus C. Berns</name><affiliation wicri:level="3"><nlm:affiliation>Department of Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Carl-von-Linné Weg 10, D-50829 Cologne, Germany.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>Department of Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Carl-von-Linné Weg 10, D-50829 Cologne</wicri:regionArea><placeName><region type="land" nuts="1">Rhénanie-du-Nord-Westphalie</region><region type="district" nuts="2">District de Cologne</region><settlement type="city">Cologne</settlement></placeName></affiliation></author><author><name sortKey="Bujdoso, Nora" sort="Bujdoso, Nora" uniqKey="Bujdoso N" first="Nora" last="Bujdoso">Nora Bujdoso</name><affiliation wicri:level="3"><nlm:affiliation>Department of Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Carl-von-Linné Weg 10, D-50829 Cologne, Germany.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>Department of Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Carl-von-Linné Weg 10, D-50829 Cologne</wicri:regionArea><placeName><region type="land" nuts="1">Rhénanie-du-Nord-Westphalie</region><region type="district" nuts="2">District de Cologne</region><settlement type="city">Cologne</settlement></placeName></affiliation></author><author><name sortKey="Piofczyk, Thomas" sort="Piofczyk, Thomas" uniqKey="Piofczyk T" first="Thomas" last="Piofczyk">Thomas Piofczyk</name><affiliation wicri:level="3"><nlm:affiliation>Department of Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Carl-von-Linné Weg 10, D-50829 Cologne, Germany.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>Department of Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Carl-von-Linné Weg 10, D-50829 Cologne</wicri:regionArea><placeName><region type="land" nuts="1">Rhénanie-du-Nord-Westphalie</region><region type="district" nuts="2">District de Cologne</region><settlement type="city">Cologne</settlement></placeName></affiliation></author><author><name sortKey="De Lorenzo, Laura" sort="De Lorenzo, Laura" uniqKey="De Lorenzo L" first="Laura" last="De Lorenzo">Laura De Lorenzo</name><affiliation wicri:level="1"><nlm:affiliation>Department of Plant Molecular Genetics, Centro Nacional de Biotecnología, Consejo Superior de Investigaciones Científicas (CSIC), Campus de Cantoblanco, 28049 Madrid, Spain.</nlm:affiliation><country xml:lang="fr">Espagne</country><wicri:regionArea>Department of Plant Molecular Genetics, Centro Nacional de Biotecnología, Consejo Superior de Investigaciones Científicas (CSIC), Campus de Cantoblanco, 28049 Madrid</wicri:regionArea><placeName><settlement type="city">Madrid</settlement><region nuts="2" type="region">Communauté de Madrid</region></placeName></affiliation></author><author><name sortKey="Barrero Sicilia, Cristina" sort="Barrero Sicilia, Cristina" uniqKey="Barrero Sicilia C" first="Cristina" last="Barrero-Sicilia">Cristina Barrero-Sicilia</name><affiliation wicri:level="1"><nlm:affiliation>Centro de Biotecnología y Genómica de Plantas (UPM-INIA). ETSI agrónomos, Universidad Politécnica de Madrid, Campus de Montegancedo, Pozuelo de Alarcón, 28223 Madrid, Spain.</nlm:affiliation><country xml:lang="fr">Espagne</country><wicri:regionArea>Centro de Biotecnología y Genómica de Plantas (UPM-INIA). ETSI agrónomos, Universidad Politécnica de Madrid, Campus de Montegancedo, Pozuelo de Alarcón, 28223 Madrid</wicri:regionArea><placeName><settlement type="city">Madrid</settlement><region nuts="2" type="region">Communauté de Madrid</region></placeName></affiliation></author><author><name sortKey="Mateos, Isabel" sort="Mateos, Isabel" uniqKey="Mateos I" first="Isabel" last="Mateos">Isabel Mateos</name><affiliation wicri:level="1"><nlm:affiliation>Department of Plant Molecular Genetics, Centro Nacional de Biotecnología, Consejo Superior de Investigaciones Científicas (CSIC), Campus de Cantoblanco, 28049 Madrid, Spain.</nlm:affiliation><country xml:lang="fr">Espagne</country><wicri:regionArea>Department of Plant Molecular Genetics, Centro Nacional de Biotecnología, Consejo Superior de Investigaciones Científicas (CSIC), Campus de Cantoblanco, 28049 Madrid</wicri:regionArea><placeName><settlement type="city">Madrid</settlement><region nuts="2" type="region">Communauté de Madrid</region></placeName></affiliation></author><author><name sortKey="Piednoel, Mathieu" sort="Piednoel, Mathieu" uniqKey="Piednoel M" first="Mathieu" last="Piednoël">Mathieu Piednoël</name><affiliation wicri:level="3"><nlm:affiliation>Department of Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Carl-von-Linné Weg 10, D-50829 Cologne, Germany.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>Department of Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Carl-von-Linné Weg 10, D-50829 Cologne</wicri:regionArea><placeName><region type="land" nuts="1">Rhénanie-du-Nord-Westphalie</region><region type="district" nuts="2">District de Cologne</region><settlement type="city">Cologne</settlement></placeName></affiliation></author><author><name sortKey="Hagmann, Jorg" sort="Hagmann, Jorg" uniqKey="Hagmann J" first="Jörg" last="Hagmann">Jörg Hagmann</name><affiliation wicri:level="1"><nlm:affiliation>Department of Molecular Biology, Max Planck Institute for Developmental Biology, 72076 Tübingen, Germany.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>Department of Molecular Biology, Max Planck Institute for Developmental Biology, 72076 Tübingen</wicri:regionArea><wicri:noRegion>72076 Tübingen</wicri:noRegion><wicri:noRegion>72076 Tübingen</wicri:noRegion><wicri:noRegion>72076 Tübingen</wicri:noRegion></affiliation></author><author><name sortKey="Chen Min Tao, Romy" sort="Chen Min Tao, Romy" uniqKey="Chen Min Tao R" first="Romy" last="Chen-Min-Tao">Romy Chen-Min-Tao</name><affiliation wicri:level="3"><nlm:affiliation>Institut de Biologie de l'Ecole Normale Supérieure (IBENS), Centre National de la Recherche Scientifique (CNRS) UMR 8197 and Institut National de la Santé et de la Recherche Médicale (INSERM) U 1024, Paris, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>Institut de Biologie de l'Ecole Normale Supérieure (IBENS), Centre National de la Recherche Scientifique (CNRS) UMR 8197 and Institut National de la Santé et de la Recherche Médicale (INSERM) U 1024, Paris</wicri:regionArea><placeName><region type="region">Île-de-France</region><region type="old region">Île-de-France</region><settlement type="city">Paris</settlement></placeName></affiliation></author><author><name sortKey="Iglesias Fernandez, Raquel" sort="Iglesias Fernandez, Raquel" uniqKey="Iglesias Fernandez R" first="Raquel" last="Iglesias-Fernández">Raquel Iglesias-Fernández</name><affiliation wicri:level="1"><nlm:affiliation>Centro de Biotecnología y Genómica de Plantas (UPM-INIA). ETSI agrónomos, Universidad Politécnica de Madrid, Campus de Montegancedo, Pozuelo de Alarcón, 28223 Madrid, Spain.</nlm:affiliation><country xml:lang="fr">Espagne</country><wicri:regionArea>Centro de Biotecnología y Genómica de Plantas (UPM-INIA). ETSI agrónomos, Universidad Politécnica de Madrid, Campus de Montegancedo, Pozuelo de Alarcón, 28223 Madrid</wicri:regionArea><placeName><settlement type="city">Madrid</settlement><region nuts="2" type="region">Communauté de Madrid</region></placeName></affiliation></author><author><name sortKey="Schuster, Stephan C" sort="Schuster, Stephan C" uniqKey="Schuster S" first="Stephan C" last="Schuster">Stephan C. Schuster</name><affiliation wicri:level="4"><nlm:affiliation>Center for Comparative Genomics and Bioinformatics, Pennsylvania State University, University Park, Pennsylvania 16802, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Center for Comparative Genomics and Bioinformatics, Pennsylvania State University, University Park, Pennsylvania 16802</wicri:regionArea><orgName type="university">Université d'État de Pennsylvanie</orgName><placeName><settlement type="city">University Park (Pennsylvanie)</settlement><region type="state">Pennsylvanie</region></placeName></affiliation></author><author><name sortKey="Alonso Blanco, Carlos" sort="Alonso Blanco, Carlos" uniqKey="Alonso Blanco C" first="Carlos" last="Alonso-Blanco">Carlos Alonso-Blanco</name><affiliation wicri:level="1"><nlm:affiliation>Department of Plant Molecular Genetics, Centro Nacional de Biotecnología, Consejo Superior de Investigaciones Científicas (CSIC), Campus de Cantoblanco, 28049 Madrid, Spain.</nlm:affiliation><country xml:lang="fr">Espagne</country><wicri:regionArea>Department of Plant Molecular Genetics, Centro Nacional de Biotecnología, Consejo Superior de Investigaciones Científicas (CSIC), Campus de Cantoblanco, 28049 Madrid</wicri:regionArea><placeName><settlement type="city">Madrid</settlement><region nuts="2" type="region">Communauté de Madrid</region></placeName></affiliation></author><author><name sortKey="Roudier, Francois" sort="Roudier, Francois" uniqKey="Roudier F" first="François" last="Roudier">François Roudier</name><affiliation wicri:level="3"><nlm:affiliation>Institut de Biologie de l'Ecole Normale Supérieure (IBENS), Centre National de la Recherche Scientifique (CNRS) UMR 8197 and Institut National de la Santé et de la Recherche Médicale (INSERM) U 1024, Paris, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>Institut de Biologie de l'Ecole Normale Supérieure (IBENS), Centre National de la Recherche Scientifique (CNRS) UMR 8197 and Institut National de la Santé et de la Recherche Médicale (INSERM) U 1024, Paris</wicri:regionArea><placeName><region type="region">Île-de-France</region><region type="old region">Île-de-France</region><settlement type="city">Paris</settlement></placeName></affiliation></author><author><name sortKey="Carbonero, Pilar" sort="Carbonero, Pilar" uniqKey="Carbonero P" first="Pilar" last="Carbonero">Pilar Carbonero</name><affiliation wicri:level="1"><nlm:affiliation>Centro de Biotecnología y Genómica de Plantas (UPM-INIA). ETSI agrónomos, Universidad Politécnica de Madrid, Campus de Montegancedo, Pozuelo de Alarcón, 28223 Madrid, Spain.</nlm:affiliation><country xml:lang="fr">Espagne</country><wicri:regionArea>Centro de Biotecnología y Genómica de Plantas (UPM-INIA). ETSI agrónomos, Universidad Politécnica de Madrid, Campus de Montegancedo, Pozuelo de Alarcón, 28223 Madrid</wicri:regionArea><placeName><settlement type="city">Madrid</settlement><region nuts="2" type="region">Communauté de Madrid</region></placeName></affiliation></author><author><name sortKey="Paz Ares, Javier" sort="Paz Ares, Javier" uniqKey="Paz Ares J" first="Javier" last="Paz-Ares">Javier Paz-Ares</name><affiliation wicri:level="1"><nlm:affiliation>Department of Plant Molecular Genetics, Centro Nacional de Biotecnología, Consejo Superior de Investigaciones Científicas (CSIC), Campus de Cantoblanco, 28049 Madrid, Spain.</nlm:affiliation><country xml:lang="fr">Espagne</country><wicri:regionArea>Department of Plant Molecular Genetics, Centro Nacional de Biotecnología, Consejo Superior de Investigaciones Científicas (CSIC), Campus de Cantoblanco, 28049 Madrid</wicri:regionArea><placeName><settlement type="city">Madrid</settlement><region nuts="2" type="region">Communauté de Madrid</region></placeName></affiliation></author><author><name sortKey="Davis, Seth J" sort="Davis, Seth J" uniqKey="Davis S" first="Seth J" last="Davis">Seth J. Davis</name><affiliation wicri:level="3"><nlm:affiliation>Department of Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Carl-von-Linné Weg 10, D-50829 Cologne, Germany.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>Department of Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Carl-von-Linné Weg 10, D-50829 Cologne</wicri:regionArea><placeName><region type="land" nuts="1">Rhénanie-du-Nord-Westphalie</region><region type="district" nuts="2">District de Cologne</region><settlement type="city">Cologne</settlement></placeName></affiliation></author><author><name sortKey="Pecinka, Ales" sort="Pecinka, Ales" uniqKey="Pecinka A" first="Ales" last="Pecinka">Ales Pecinka</name><affiliation wicri:level="3"><nlm:affiliation>Department of Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Carl-von-Linné Weg 10, D-50829 Cologne, Germany.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>Department of Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Carl-von-Linné Weg 10, D-50829 Cologne</wicri:regionArea><placeName><region type="land" nuts="1">Rhénanie-du-Nord-Westphalie</region><region type="district" nuts="2">District de Cologne</region><settlement type="city">Cologne</settlement></placeName></affiliation></author><author><name sortKey="Quesneville, Hadi" sort="Quesneville, Hadi" uniqKey="Quesneville H" first="Hadi" last="Quesneville">Hadi Quesneville</name><affiliation wicri:level="1"><nlm:affiliation>INRA, UR1164 URGI-Research Unit in Genomics-Info, INRA de Versailles-Grignon, Route de Saint-Cyr, Versailles 78026, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>INRA, UR1164 URGI-Research Unit in Genomics-Info, INRA de Versailles-Grignon, Route de Saint-Cyr, Versailles 78026</wicri:regionArea><wicri:noRegion>78026</wicri:noRegion><wicri:noRegion>78026</wicri:noRegion></affiliation></author><author><name sortKey="Colot, Vincent" sort="Colot, Vincent" uniqKey="Colot V" first="Vincent" last="Colot">Vincent Colot</name><affiliation wicri:level="3"><nlm:affiliation>Institut de Biologie de l'Ecole Normale Supérieure (IBENS), Centre National de la Recherche Scientifique (CNRS) UMR 8197 and Institut National de la Santé et de la Recherche Médicale (INSERM) U 1024, Paris, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>Institut de Biologie de l'Ecole Normale Supérieure (IBENS), Centre National de la Recherche Scientifique (CNRS) UMR 8197 and Institut National de la Santé et de la Recherche Médicale (INSERM) U 1024, Paris</wicri:regionArea><placeName><region type="region">Île-de-France</region><region type="old region">Île-de-France</region><settlement type="city">Paris</settlement></placeName></affiliation></author><author><name sortKey="Lysak, Martin A" sort="Lysak, Martin A" uniqKey="Lysak M" first="Martin A" last="Lysak">Martin A. Lysak</name><affiliation wicri:level="3"><nlm:affiliation>Research group Plant Cytogenomics, CEITEC - Central European Institute of Technology, Masaryk University, Brno, Czech Republic.</nlm:affiliation><country xml:lang="fr">République tchèque</country><wicri:regionArea>Research group Plant Cytogenomics, CEITEC - Central European Institute of Technology, Masaryk University, Brno</wicri:regionArea><placeName><settlement type="city">Brno</settlement><region>Moravie</region></placeName></affiliation></author><author><name sortKey="Weigel, Detlef" sort="Weigel, Detlef" uniqKey="Weigel D" first="Detlef" last="Weigel">Detlef Weigel</name><affiliation wicri:level="1"><nlm:affiliation>Department of Molecular Biology, Max Planck Institute for Developmental Biology, 72076 Tübingen, Germany.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>Department of Molecular Biology, Max Planck Institute for Developmental Biology, 72076 Tübingen</wicri:regionArea><wicri:noRegion>72076 Tübingen</wicri:noRegion><wicri:noRegion>72076 Tübingen</wicri:noRegion><wicri:noRegion>72076 Tübingen</wicri:noRegion></affiliation></author><author><name sortKey="Coupland, George" sort="Coupland, George" uniqKey="Coupland G" first="George" last="Coupland">George Coupland</name><affiliation wicri:level="3"><nlm:affiliation>Department of Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Carl-von-Linné Weg 10, D-50829 Cologne, Germany.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>Department of Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Carl-von-Linné Weg 10, D-50829 Cologne</wicri:regionArea><placeName><region type="land" nuts="1">Rhénanie-du-Nord-Westphalie</region><region type="district" nuts="2">District de Cologne</region><settlement type="city">Cologne</settlement></placeName></affiliation></author><author><name sortKey="Schneeberger, Korbinian" sort="Schneeberger, Korbinian" uniqKey="Schneeberger K" first="Korbinian" last="Schneeberger">Korbinian Schneeberger</name><affiliation wicri:level="3"><nlm:affiliation>Department of Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Carl-von-Linné Weg 10, D-50829 Cologne, Germany.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>Department of Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Carl-von-Linné Weg 10, D-50829 Cologne</wicri:regionArea><placeName><region type="land" nuts="1">Rhénanie-du-Nord-Westphalie</region><region type="district" nuts="2">District de Cologne</region><settlement type="city">Cologne</settlement></placeName></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2015">2015</date><idno type="RBID">pubmed:27246759</idno><idno type="pmid">27246759</idno><idno type="doi">10.1038/nplants.2014.23</idno><idno type="wicri:Area/PubMed/Corpus">003018</idno><idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Corpus" wicri:corpus="PubMed">003018</idno><idno type="wicri:Area/PubMed/Curation">002F37</idno><idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Curation">002F37</idno><idno type="wicri:Area/PubMed/Checkpoint">002F37</idno><idno type="wicri:explorRef" wicri:stream="Checkpoint" wicri:step="PubMed">002F37</idno><idno type="wicri:Area/Ncbi/Merge">003619</idno><idno type="wicri:Area/Ncbi/Curation">003619</idno><idno type="wicri:Area/Ncbi/Checkpoint">003619</idno><idno type="wicri:Area/Main/Merge">002D54</idno><idno type="wicri:Area/Main/Curation">002D54</idno><idno type="wicri:Area/Main/Exploration">002D54</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Genome expansion of Arabis alpina linked with retrotransposition and reduced symmetric DNA methylation.</title><author><name sortKey="Willing, Eva Maria" sort="Willing, Eva Maria" uniqKey="Willing E" first="Eva-Maria" last="Willing">Eva-Maria Willing</name><affiliation wicri:level="3"><nlm:affiliation>Department of Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Carl-von-Linné Weg 10, D-50829 Cologne, Germany.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>Department of Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Carl-von-Linné Weg 10, D-50829 Cologne</wicri:regionArea><placeName><region type="land" nuts="1">Rhénanie-du-Nord-Westphalie</region><region type="district" nuts="2">District de Cologne</region><settlement type="city">Cologne</settlement></placeName></affiliation></author><author><name sortKey="Rawat, Vimal" sort="Rawat, Vimal" uniqKey="Rawat V" first="Vimal" last="Rawat">Vimal Rawat</name><affiliation wicri:level="3"><nlm:affiliation>Department of Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Carl-von-Linné Weg 10, D-50829 Cologne, Germany.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>Department of Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Carl-von-Linné Weg 10, D-50829 Cologne</wicri:regionArea><placeName><region type="land" nuts="1">Rhénanie-du-Nord-Westphalie</region><region type="district" nuts="2">District de Cologne</region><settlement type="city">Cologne</settlement></placeName></affiliation></author><author><name sortKey="Mandakova, Terezie" sort="Mandakova, Terezie" uniqKey="Mandakova T" first="Terezie" last="Mandáková">Terezie Mandáková</name><affiliation wicri:level="3"><nlm:affiliation>Research group Plant Cytogenomics, CEITEC - Central European Institute of Technology, Masaryk University, Brno, Czech Republic.</nlm:affiliation><country xml:lang="fr">République tchèque</country><wicri:regionArea>Research group Plant Cytogenomics, CEITEC - Central European Institute of Technology, Masaryk University, Brno</wicri:regionArea><placeName><settlement type="city">Brno</settlement><region>Moravie</region></placeName></affiliation></author><author><name sortKey="Maumus, Florian" sort="Maumus, Florian" uniqKey="Maumus F" first="Florian" last="Maumus">Florian Maumus</name><affiliation wicri:level="3"><nlm:affiliation>INRA, UR1164 URGI-Research Unit in Genomics-Info, INRA de Versailles-Grignon, Route de Saint-Cyr, Versailles 78026, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>INRA, UR1164 URGI-Research Unit in Genomics-Info, INRA de Versailles-Grignon, Route de Saint-Cyr, Versailles 78026</wicri:regionArea><placeName><region type="region" nuts="2">Île-de-France</region></placeName></affiliation></author><author><name sortKey="James, Geo Velikkakam" sort="James, Geo Velikkakam" uniqKey="James G" first="Geo Velikkakam" last="James">Geo Velikkakam James</name><affiliation wicri:level="3"><nlm:affiliation>Department of Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Carl-von-Linné Weg 10, D-50829 Cologne, Germany.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>Department of Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Carl-von-Linné Weg 10, D-50829 Cologne</wicri:regionArea><placeName><region type="land" nuts="1">Rhénanie-du-Nord-Westphalie</region><region type="district" nuts="2">District de Cologne</region><settlement type="city">Cologne</settlement></placeName></affiliation></author><author><name sortKey="Nordstrom, Karl J V" sort="Nordstrom, Karl J V" uniqKey="Nordstrom K" first="Karl J V" last="Nordström">Karl J V. Nordström</name><affiliation wicri:level="3"><nlm:affiliation>Department of Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Carl-von-Linné Weg 10, D-50829 Cologne, Germany.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>Department of Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Carl-von-Linné Weg 10, D-50829 Cologne</wicri:regionArea><placeName><region type="land" nuts="1">Rhénanie-du-Nord-Westphalie</region><region type="district" nuts="2">District de Cologne</region><settlement type="city">Cologne</settlement></placeName></affiliation></author><author><name sortKey="Becker, Claude" sort="Becker, Claude" uniqKey="Becker C" first="Claude" last="Becker">Claude Becker</name><affiliation wicri:level="1"><nlm:affiliation>Department of Molecular Biology, Max Planck Institute for Developmental Biology, 72076 Tübingen, Germany.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>Department of Molecular Biology, Max Planck Institute for Developmental Biology, 72076 Tübingen</wicri:regionArea><wicri:noRegion>72076 Tübingen</wicri:noRegion><wicri:noRegion>72076 Tübingen</wicri:noRegion><wicri:noRegion>72076 Tübingen</wicri:noRegion></affiliation></author><author><name sortKey="Warthmann, Norman" sort="Warthmann, Norman" uniqKey="Warthmann N" first="Norman" last="Warthmann">Norman Warthmann</name><affiliation wicri:level="1"><nlm:affiliation>Department of Molecular Biology, Max Planck Institute for Developmental Biology, 72076 Tübingen, Germany.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>Department of Molecular Biology, Max Planck Institute for Developmental Biology, 72076 Tübingen</wicri:regionArea><wicri:noRegion>72076 Tübingen</wicri:noRegion><wicri:noRegion>72076 Tübingen</wicri:noRegion><wicri:noRegion>72076 Tübingen</wicri:noRegion></affiliation></author><author><name sortKey="Chica, Claudia" sort="Chica, Claudia" uniqKey="Chica C" first="Claudia" last="Chica">Claudia Chica</name><affiliation wicri:level="3"><nlm:affiliation>Institut de Biologie de l'Ecole Normale Supérieure (IBENS), Centre National de la Recherche Scientifique (CNRS) UMR 8197 and Institut National de la Santé et de la Recherche Médicale (INSERM) U 1024, Paris, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>Institut de Biologie de l'Ecole Normale Supérieure (IBENS), Centre National de la Recherche Scientifique (CNRS) UMR 8197 and Institut National de la Santé et de la Recherche Médicale (INSERM) U 1024, Paris</wicri:regionArea><placeName><region type="region">Île-de-France</region><region type="old region">Île-de-France</region><settlement type="city">Paris</settlement></placeName></affiliation></author><author><name sortKey="Szarzynska, Bogna" sort="Szarzynska, Bogna" uniqKey="Szarzynska B" first="Bogna" last="Szarzynska">Bogna Szarzynska</name><affiliation wicri:level="3"><nlm:affiliation>Institut de Biologie de l'Ecole Normale Supérieure (IBENS), Centre National de la Recherche Scientifique (CNRS) UMR 8197 and Institut National de la Santé et de la Recherche Médicale (INSERM) U 1024, Paris, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>Institut de Biologie de l'Ecole Normale Supérieure (IBENS), Centre National de la Recherche Scientifique (CNRS) UMR 8197 and Institut National de la Santé et de la Recherche Médicale (INSERM) U 1024, Paris</wicri:regionArea><placeName><region type="region">Île-de-France</region><region type="old region">Île-de-France</region><settlement type="city">Paris</settlement></placeName></affiliation></author><author><name sortKey="Zytnicki, Matthias" sort="Zytnicki, Matthias" uniqKey="Zytnicki M" first="Matthias" last="Zytnicki">Matthias Zytnicki</name><affiliation wicri:level="1"><nlm:affiliation>INRA, UR1164 URGI-Research Unit in Genomics-Info, INRA de Versailles-Grignon, Route de Saint-Cyr, Versailles 78026, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>INRA, UR1164 URGI-Research Unit in Genomics-Info, INRA de Versailles-Grignon, Route de Saint-Cyr, Versailles 78026</wicri:regionArea><wicri:noRegion>78026</wicri:noRegion><wicri:noRegion>78026</wicri:noRegion></affiliation></author><author><name sortKey="Albani, Maria C" sort="Albani, Maria C" uniqKey="Albani M" first="Maria C" last="Albani">Maria C. Albani</name><affiliation wicri:level="3"><nlm:affiliation>Department of Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Carl-von-Linné Weg 10, D-50829 Cologne, Germany.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>Department of Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Carl-von-Linné Weg 10, D-50829 Cologne</wicri:regionArea><placeName><region type="land" nuts="1">Rhénanie-du-Nord-Westphalie</region><region type="district" nuts="2">District de Cologne</region><settlement type="city">Cologne</settlement></placeName></affiliation></author><author><name sortKey="Kiefer, Christiane" sort="Kiefer, Christiane" uniqKey="Kiefer C" first="Christiane" last="Kiefer">Christiane Kiefer</name><affiliation wicri:level="3"><nlm:affiliation>Department of Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Carl-von-Linné Weg 10, D-50829 Cologne, Germany.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>Department of Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Carl-von-Linné Weg 10, D-50829 Cologne</wicri:regionArea><placeName><region type="land" nuts="1">Rhénanie-du-Nord-Westphalie</region><region type="district" nuts="2">District de Cologne</region><settlement type="city">Cologne</settlement></placeName></affiliation></author><author><name sortKey="Bergonzi, Sara" sort="Bergonzi, Sara" uniqKey="Bergonzi S" first="Sara" last="Bergonzi">Sara Bergonzi</name><affiliation wicri:level="3"><nlm:affiliation>Department of Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Carl-von-Linné Weg 10, D-50829 Cologne, Germany.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>Department of Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Carl-von-Linné Weg 10, D-50829 Cologne</wicri:regionArea><placeName><region type="land" nuts="1">Rhénanie-du-Nord-Westphalie</region><region type="district" nuts="2">District de Cologne</region><settlement type="city">Cologne</settlement></placeName></affiliation></author><author><name sortKey="Castaings, Loren" sort="Castaings, Loren" uniqKey="Castaings L" first="Loren" last="Castaings">Loren Castaings</name><affiliation wicri:level="3"><nlm:affiliation>Department of Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Carl-von-Linné Weg 10, D-50829 Cologne, Germany.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>Department of Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Carl-von-Linné Weg 10, D-50829 Cologne</wicri:regionArea><placeName><region type="land" nuts="1">Rhénanie-du-Nord-Westphalie</region><region type="district" nuts="2">District de Cologne</region><settlement type="city">Cologne</settlement></placeName></affiliation></author><author><name sortKey="Mateos, Julieta L" sort="Mateos, Julieta L" uniqKey="Mateos J" first="Julieta L" last="Mateos">Julieta L. Mateos</name><affiliation wicri:level="3"><nlm:affiliation>Department of Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Carl-von-Linné Weg 10, D-50829 Cologne, Germany.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>Department of Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Carl-von-Linné Weg 10, D-50829 Cologne</wicri:regionArea><placeName><region type="land" nuts="1">Rhénanie-du-Nord-Westphalie</region><region type="district" nuts="2">District de Cologne</region><settlement type="city">Cologne</settlement></placeName></affiliation></author><author><name sortKey="Berns, Markus C" sort="Berns, Markus C" uniqKey="Berns M" first="Markus C" last="Berns">Markus C. Berns</name><affiliation wicri:level="3"><nlm:affiliation>Department of Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Carl-von-Linné Weg 10, D-50829 Cologne, Germany.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>Department of Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Carl-von-Linné Weg 10, D-50829 Cologne</wicri:regionArea><placeName><region type="land" nuts="1">Rhénanie-du-Nord-Westphalie</region><region type="district" nuts="2">District de Cologne</region><settlement type="city">Cologne</settlement></placeName></affiliation></author><author><name sortKey="Bujdoso, Nora" sort="Bujdoso, Nora" uniqKey="Bujdoso N" first="Nora" last="Bujdoso">Nora Bujdoso</name><affiliation wicri:level="3"><nlm:affiliation>Department of Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Carl-von-Linné Weg 10, D-50829 Cologne, Germany.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>Department of Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Carl-von-Linné Weg 10, D-50829 Cologne</wicri:regionArea><placeName><region type="land" nuts="1">Rhénanie-du-Nord-Westphalie</region><region type="district" nuts="2">District de Cologne</region><settlement type="city">Cologne</settlement></placeName></affiliation></author><author><name sortKey="Piofczyk, Thomas" sort="Piofczyk, Thomas" uniqKey="Piofczyk T" first="Thomas" last="Piofczyk">Thomas Piofczyk</name><affiliation wicri:level="3"><nlm:affiliation>Department of Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Carl-von-Linné Weg 10, D-50829 Cologne, Germany.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>Department of Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Carl-von-Linné Weg 10, D-50829 Cologne</wicri:regionArea><placeName><region type="land" nuts="1">Rhénanie-du-Nord-Westphalie</region><region type="district" nuts="2">District de Cologne</region><settlement type="city">Cologne</settlement></placeName></affiliation></author><author><name sortKey="De Lorenzo, Laura" sort="De Lorenzo, Laura" uniqKey="De Lorenzo L" first="Laura" last="De Lorenzo">Laura De Lorenzo</name><affiliation wicri:level="1"><nlm:affiliation>Department of Plant Molecular Genetics, Centro Nacional de Biotecnología, Consejo Superior de Investigaciones Científicas (CSIC), Campus de Cantoblanco, 28049 Madrid, Spain.</nlm:affiliation><country xml:lang="fr">Espagne</country><wicri:regionArea>Department of Plant Molecular Genetics, Centro Nacional de Biotecnología, Consejo Superior de Investigaciones Científicas (CSIC), Campus de Cantoblanco, 28049 Madrid</wicri:regionArea><placeName><settlement type="city">Madrid</settlement><region nuts="2" type="region">Communauté de Madrid</region></placeName></affiliation></author><author><name sortKey="Barrero Sicilia, Cristina" sort="Barrero Sicilia, Cristina" uniqKey="Barrero Sicilia C" first="Cristina" last="Barrero-Sicilia">Cristina Barrero-Sicilia</name><affiliation wicri:level="1"><nlm:affiliation>Centro de Biotecnología y Genómica de Plantas (UPM-INIA). ETSI agrónomos, Universidad Politécnica de Madrid, Campus de Montegancedo, Pozuelo de Alarcón, 28223 Madrid, Spain.</nlm:affiliation><country xml:lang="fr">Espagne</country><wicri:regionArea>Centro de Biotecnología y Genómica de Plantas (UPM-INIA). ETSI agrónomos, Universidad Politécnica de Madrid, Campus de Montegancedo, Pozuelo de Alarcón, 28223 Madrid</wicri:regionArea><placeName><settlement type="city">Madrid</settlement><region nuts="2" type="region">Communauté de Madrid</region></placeName></affiliation></author><author><name sortKey="Mateos, Isabel" sort="Mateos, Isabel" uniqKey="Mateos I" first="Isabel" last="Mateos">Isabel Mateos</name><affiliation wicri:level="1"><nlm:affiliation>Department of Plant Molecular Genetics, Centro Nacional de Biotecnología, Consejo Superior de Investigaciones Científicas (CSIC), Campus de Cantoblanco, 28049 Madrid, Spain.</nlm:affiliation><country xml:lang="fr">Espagne</country><wicri:regionArea>Department of Plant Molecular Genetics, Centro Nacional de Biotecnología, Consejo Superior de Investigaciones Científicas (CSIC), Campus de Cantoblanco, 28049 Madrid</wicri:regionArea><placeName><settlement type="city">Madrid</settlement><region nuts="2" type="region">Communauté de Madrid</region></placeName></affiliation></author><author><name sortKey="Piednoel, Mathieu" sort="Piednoel, Mathieu" uniqKey="Piednoel M" first="Mathieu" last="Piednoël">Mathieu Piednoël</name><affiliation wicri:level="3"><nlm:affiliation>Department of Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Carl-von-Linné Weg 10, D-50829 Cologne, Germany.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>Department of Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Carl-von-Linné Weg 10, D-50829 Cologne</wicri:regionArea><placeName><region type="land" nuts="1">Rhénanie-du-Nord-Westphalie</region><region type="district" nuts="2">District de Cologne</region><settlement type="city">Cologne</settlement></placeName></affiliation></author><author><name sortKey="Hagmann, Jorg" sort="Hagmann, Jorg" uniqKey="Hagmann J" first="Jörg" last="Hagmann">Jörg Hagmann</name><affiliation wicri:level="1"><nlm:affiliation>Department of Molecular Biology, Max Planck Institute for Developmental Biology, 72076 Tübingen, Germany.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>Department of Molecular Biology, Max Planck Institute for Developmental Biology, 72076 Tübingen</wicri:regionArea><wicri:noRegion>72076 Tübingen</wicri:noRegion><wicri:noRegion>72076 Tübingen</wicri:noRegion><wicri:noRegion>72076 Tübingen</wicri:noRegion></affiliation></author><author><name sortKey="Chen Min Tao, Romy" sort="Chen Min Tao, Romy" uniqKey="Chen Min Tao R" first="Romy" last="Chen-Min-Tao">Romy Chen-Min-Tao</name><affiliation wicri:level="3"><nlm:affiliation>Institut de Biologie de l'Ecole Normale Supérieure (IBENS), Centre National de la Recherche Scientifique (CNRS) UMR 8197 and Institut National de la Santé et de la Recherche Médicale (INSERM) U 1024, Paris, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>Institut de Biologie de l'Ecole Normale Supérieure (IBENS), Centre National de la Recherche Scientifique (CNRS) UMR 8197 and Institut National de la Santé et de la Recherche Médicale (INSERM) U 1024, Paris</wicri:regionArea><placeName><region type="region">Île-de-France</region><region type="old region">Île-de-France</region><settlement type="city">Paris</settlement></placeName></affiliation></author><author><name sortKey="Iglesias Fernandez, Raquel" sort="Iglesias Fernandez, Raquel" uniqKey="Iglesias Fernandez R" first="Raquel" last="Iglesias-Fernández">Raquel Iglesias-Fernández</name><affiliation wicri:level="1"><nlm:affiliation>Centro de Biotecnología y Genómica de Plantas (UPM-INIA). ETSI agrónomos, Universidad Politécnica de Madrid, Campus de Montegancedo, Pozuelo de Alarcón, 28223 Madrid, Spain.</nlm:affiliation><country xml:lang="fr">Espagne</country><wicri:regionArea>Centro de Biotecnología y Genómica de Plantas (UPM-INIA). ETSI agrónomos, Universidad Politécnica de Madrid, Campus de Montegancedo, Pozuelo de Alarcón, 28223 Madrid</wicri:regionArea><placeName><settlement type="city">Madrid</settlement><region nuts="2" type="region">Communauté de Madrid</region></placeName></affiliation></author><author><name sortKey="Schuster, Stephan C" sort="Schuster, Stephan C" uniqKey="Schuster S" first="Stephan C" last="Schuster">Stephan C. Schuster</name><affiliation wicri:level="4"><nlm:affiliation>Center for Comparative Genomics and Bioinformatics, Pennsylvania State University, University Park, Pennsylvania 16802, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Center for Comparative Genomics and Bioinformatics, Pennsylvania State University, University Park, Pennsylvania 16802</wicri:regionArea><orgName type="university">Université d'État de Pennsylvanie</orgName><placeName><settlement type="city">University Park (Pennsylvanie)</settlement><region type="state">Pennsylvanie</region></placeName></affiliation></author><author><name sortKey="Alonso Blanco, Carlos" sort="Alonso Blanco, Carlos" uniqKey="Alonso Blanco C" first="Carlos" last="Alonso-Blanco">Carlos Alonso-Blanco</name><affiliation wicri:level="1"><nlm:affiliation>Department of Plant Molecular Genetics, Centro Nacional de Biotecnología, Consejo Superior de Investigaciones Científicas (CSIC), Campus de Cantoblanco, 28049 Madrid, Spain.</nlm:affiliation><country xml:lang="fr">Espagne</country><wicri:regionArea>Department of Plant Molecular Genetics, Centro Nacional de Biotecnología, Consejo Superior de Investigaciones Científicas (CSIC), Campus de Cantoblanco, 28049 Madrid</wicri:regionArea><placeName><settlement type="city">Madrid</settlement><region nuts="2" type="region">Communauté de Madrid</region></placeName></affiliation></author><author><name sortKey="Roudier, Francois" sort="Roudier, Francois" uniqKey="Roudier F" first="François" last="Roudier">François Roudier</name><affiliation wicri:level="3"><nlm:affiliation>Institut de Biologie de l'Ecole Normale Supérieure (IBENS), Centre National de la Recherche Scientifique (CNRS) UMR 8197 and Institut National de la Santé et de la Recherche Médicale (INSERM) U 1024, Paris, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>Institut de Biologie de l'Ecole Normale Supérieure (IBENS), Centre National de la Recherche Scientifique (CNRS) UMR 8197 and Institut National de la Santé et de la Recherche Médicale (INSERM) U 1024, Paris</wicri:regionArea><placeName><region type="region">Île-de-France</region><region type="old region">Île-de-France</region><settlement type="city">Paris</settlement></placeName></affiliation></author><author><name sortKey="Carbonero, Pilar" sort="Carbonero, Pilar" uniqKey="Carbonero P" first="Pilar" last="Carbonero">Pilar Carbonero</name><affiliation wicri:level="1"><nlm:affiliation>Centro de Biotecnología y Genómica de Plantas (UPM-INIA). ETSI agrónomos, Universidad Politécnica de Madrid, Campus de Montegancedo, Pozuelo de Alarcón, 28223 Madrid, Spain.</nlm:affiliation><country xml:lang="fr">Espagne</country><wicri:regionArea>Centro de Biotecnología y Genómica de Plantas (UPM-INIA). ETSI agrónomos, Universidad Politécnica de Madrid, Campus de Montegancedo, Pozuelo de Alarcón, 28223 Madrid</wicri:regionArea><placeName><settlement type="city">Madrid</settlement><region nuts="2" type="region">Communauté de Madrid</region></placeName></affiliation></author><author><name sortKey="Paz Ares, Javier" sort="Paz Ares, Javier" uniqKey="Paz Ares J" first="Javier" last="Paz-Ares">Javier Paz-Ares</name><affiliation wicri:level="1"><nlm:affiliation>Department of Plant Molecular Genetics, Centro Nacional de Biotecnología, Consejo Superior de Investigaciones Científicas (CSIC), Campus de Cantoblanco, 28049 Madrid, Spain.</nlm:affiliation><country xml:lang="fr">Espagne</country><wicri:regionArea>Department of Plant Molecular Genetics, Centro Nacional de Biotecnología, Consejo Superior de Investigaciones Científicas (CSIC), Campus de Cantoblanco, 28049 Madrid</wicri:regionArea><placeName><settlement type="city">Madrid</settlement><region nuts="2" type="region">Communauté de Madrid</region></placeName></affiliation></author><author><name sortKey="Davis, Seth J" sort="Davis, Seth J" uniqKey="Davis S" first="Seth J" last="Davis">Seth J. Davis</name><affiliation wicri:level="3"><nlm:affiliation>Department of Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Carl-von-Linné Weg 10, D-50829 Cologne, Germany.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>Department of Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Carl-von-Linné Weg 10, D-50829 Cologne</wicri:regionArea><placeName><region type="land" nuts="1">Rhénanie-du-Nord-Westphalie</region><region type="district" nuts="2">District de Cologne</region><settlement type="city">Cologne</settlement></placeName></affiliation></author><author><name sortKey="Pecinka, Ales" sort="Pecinka, Ales" uniqKey="Pecinka A" first="Ales" last="Pecinka">Ales Pecinka</name><affiliation wicri:level="3"><nlm:affiliation>Department of Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Carl-von-Linné Weg 10, D-50829 Cologne, Germany.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>Department of Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Carl-von-Linné Weg 10, D-50829 Cologne</wicri:regionArea><placeName><region type="land" nuts="1">Rhénanie-du-Nord-Westphalie</region><region type="district" nuts="2">District de Cologne</region><settlement type="city">Cologne</settlement></placeName></affiliation></author><author><name sortKey="Quesneville, Hadi" sort="Quesneville, Hadi" uniqKey="Quesneville H" first="Hadi" last="Quesneville">Hadi Quesneville</name><affiliation wicri:level="1"><nlm:affiliation>INRA, UR1164 URGI-Research Unit in Genomics-Info, INRA de Versailles-Grignon, Route de Saint-Cyr, Versailles 78026, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>INRA, UR1164 URGI-Research Unit in Genomics-Info, INRA de Versailles-Grignon, Route de Saint-Cyr, Versailles 78026</wicri:regionArea><wicri:noRegion>78026</wicri:noRegion><wicri:noRegion>78026</wicri:noRegion></affiliation></author><author><name sortKey="Colot, Vincent" sort="Colot, Vincent" uniqKey="Colot V" first="Vincent" last="Colot">Vincent Colot</name><affiliation wicri:level="3"><nlm:affiliation>Institut de Biologie de l'Ecole Normale Supérieure (IBENS), Centre National de la Recherche Scientifique (CNRS) UMR 8197 and Institut National de la Santé et de la Recherche Médicale (INSERM) U 1024, Paris, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>Institut de Biologie de l'Ecole Normale Supérieure (IBENS), Centre National de la Recherche Scientifique (CNRS) UMR 8197 and Institut National de la Santé et de la Recherche Médicale (INSERM) U 1024, Paris</wicri:regionArea><placeName><region type="region">Île-de-France</region><region type="old region">Île-de-France</region><settlement type="city">Paris</settlement></placeName></affiliation></author><author><name sortKey="Lysak, Martin A" sort="Lysak, Martin A" uniqKey="Lysak M" first="Martin A" last="Lysak">Martin A. Lysak</name><affiliation wicri:level="3"><nlm:affiliation>Research group Plant Cytogenomics, CEITEC - Central European Institute of Technology, Masaryk University, Brno, Czech Republic.</nlm:affiliation><country xml:lang="fr">République tchèque</country><wicri:regionArea>Research group Plant Cytogenomics, CEITEC - Central European Institute of Technology, Masaryk University, Brno</wicri:regionArea><placeName><settlement type="city">Brno</settlement><region>Moravie</region></placeName></affiliation></author><author><name sortKey="Weigel, Detlef" sort="Weigel, Detlef" uniqKey="Weigel D" first="Detlef" last="Weigel">Detlef Weigel</name><affiliation wicri:level="1"><nlm:affiliation>Department of Molecular Biology, Max Planck Institute for Developmental Biology, 72076 Tübingen, Germany.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>Department of Molecular Biology, Max Planck Institute for Developmental Biology, 72076 Tübingen</wicri:regionArea><wicri:noRegion>72076 Tübingen</wicri:noRegion><wicri:noRegion>72076 Tübingen</wicri:noRegion><wicri:noRegion>72076 Tübingen</wicri:noRegion></affiliation></author><author><name sortKey="Coupland, George" sort="Coupland, George" uniqKey="Coupland G" first="George" last="Coupland">George Coupland</name><affiliation wicri:level="3"><nlm:affiliation>Department of Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Carl-von-Linné Weg 10, D-50829 Cologne, Germany.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>Department of Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Carl-von-Linné Weg 10, D-50829 Cologne</wicri:regionArea><placeName><region type="land" nuts="1">Rhénanie-du-Nord-Westphalie</region><region type="district" nuts="2">District de Cologne</region><settlement type="city">Cologne</settlement></placeName></affiliation></author><author><name sortKey="Schneeberger, Korbinian" sort="Schneeberger, Korbinian" uniqKey="Schneeberger K" first="Korbinian" last="Schneeberger">Korbinian Schneeberger</name><affiliation wicri:level="3"><nlm:affiliation>Department of Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Carl-von-Linné Weg 10, D-50829 Cologne, Germany.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>Department of Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Carl-von-Linné Weg 10, D-50829 Cologne</wicri:regionArea><placeName><region type="land" nuts="1">Rhénanie-du-Nord-Westphalie</region><region type="district" nuts="2">District de Cologne</region><settlement type="city">Cologne</settlement></placeName></affiliation></author></analytic><series><title level="j">Nature plants</title><idno type="eISSN">2055-0278</idno><imprint><date when="2015" type="published">2015</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Despite evolutionary conserved mechanisms to silence transposable element activity, there are drastic differences in the abundance of transposable elements even among closely related plant species. We conducted a de novo assembly for the 375 Mb genome of the perennial model plant, Arabis alpina. Analysing this genome revealed long-lasting and recent transposable element activity predominately driven by Gypsy long terminal repeat retrotransposons, which extended the low-recombining pericentromeres and transformed large formerly euchromatic regions into repeat-rich pericentromeric regions. This reduced capacity for long terminal repeat retrotransposon silencing and removal in A. alpina co-occurs with unexpectedly low levels of DNA methylation. Most remarkably, the striking reduction of symmetrical CG and CHG methylation suggests weakened DNA methylation maintenance in A. alpina compared with Arabidopsis thaliana. Phylogenetic analyses indicate a highly dynamic evolution of some components of methylation maintenance machinery that might be related to the unique methylation in A. alpina.</div></front></TEI><affiliations><list><country><li>Allemagne</li><li>Espagne</li><li>France</li><li>République tchèque</li><li>États-Unis</li></country><region><li>Communauté de Madrid</li><li>District de Cologne</li><li>Moravie</li><li>Pennsylvanie</li><li>Rhénanie-du-Nord-Westphalie</li><li>Île-de-France</li></region><settlement><li>Brno</li><li>Cologne</li><li>Madrid</li><li>Paris</li><li>University Park (Pennsylvanie)</li></settlement><orgName><li>Université d'État de Pennsylvanie</li></orgName></list><tree><country name="Allemagne"><region name="Rhénanie-du-Nord-Westphalie"><name sortKey="Willing, Eva Maria" sort="Willing, Eva Maria" uniqKey="Willing E" first="Eva-Maria" last="Willing">Eva-Maria Willing</name></region><name sortKey="Albani, Maria C" sort="Albani, Maria C" uniqKey="Albani M" first="Maria C" last="Albani">Maria C. Albani</name><name sortKey="Becker, Claude" sort="Becker, Claude" uniqKey="Becker C" first="Claude" last="Becker">Claude Becker</name><name sortKey="Bergonzi, Sara" sort="Bergonzi, Sara" uniqKey="Bergonzi S" first="Sara" last="Bergonzi">Sara Bergonzi</name><name sortKey="Berns, Markus C" sort="Berns, Markus C" uniqKey="Berns M" first="Markus C" last="Berns">Markus C. Berns</name><name sortKey="Bujdoso, Nora" sort="Bujdoso, Nora" uniqKey="Bujdoso N" first="Nora" last="Bujdoso">Nora Bujdoso</name><name sortKey="Castaings, Loren" sort="Castaings, Loren" uniqKey="Castaings L" first="Loren" last="Castaings">Loren Castaings</name><name sortKey="Coupland, George" sort="Coupland, George" uniqKey="Coupland G" first="George" last="Coupland">George Coupland</name><name sortKey="Davis, Seth J" sort="Davis, Seth J" uniqKey="Davis S" first="Seth J" last="Davis">Seth J. Davis</name><name sortKey="Hagmann, Jorg" sort="Hagmann, Jorg" uniqKey="Hagmann J" first="Jörg" last="Hagmann">Jörg Hagmann</name><name sortKey="James, Geo Velikkakam" sort="James, Geo Velikkakam" uniqKey="James G" first="Geo Velikkakam" last="James">Geo Velikkakam James</name><name sortKey="Kiefer, Christiane" sort="Kiefer, Christiane" uniqKey="Kiefer C" first="Christiane" last="Kiefer">Christiane Kiefer</name><name sortKey="Mateos, Julieta L" sort="Mateos, Julieta L" uniqKey="Mateos J" first="Julieta L" last="Mateos">Julieta L. Mateos</name><name sortKey="Nordstrom, Karl J V" sort="Nordstrom, Karl J V" uniqKey="Nordstrom K" first="Karl J V" last="Nordström">Karl J V. Nordström</name><name sortKey="Pecinka, Ales" sort="Pecinka, Ales" uniqKey="Pecinka A" first="Ales" last="Pecinka">Ales Pecinka</name><name sortKey="Piednoel, Mathieu" sort="Piednoel, Mathieu" uniqKey="Piednoel M" first="Mathieu" last="Piednoël">Mathieu Piednoël</name><name sortKey="Piofczyk, Thomas" sort="Piofczyk, Thomas" uniqKey="Piofczyk T" first="Thomas" last="Piofczyk">Thomas Piofczyk</name><name sortKey="Rawat, Vimal" sort="Rawat, Vimal" uniqKey="Rawat V" first="Vimal" last="Rawat">Vimal Rawat</name><name sortKey="Schneeberger, Korbinian" sort="Schneeberger, Korbinian" uniqKey="Schneeberger K" first="Korbinian" last="Schneeberger">Korbinian Schneeberger</name><name sortKey="Warthmann, Norman" sort="Warthmann, Norman" uniqKey="Warthmann N" first="Norman" last="Warthmann">Norman Warthmann</name><name sortKey="Weigel, Detlef" sort="Weigel, Detlef" uniqKey="Weigel D" first="Detlef" last="Weigel">Detlef Weigel</name></country><country name="République tchèque"><region name="Moravie"><name sortKey="Mandakova, Terezie" sort="Mandakova, Terezie" uniqKey="Mandakova T" first="Terezie" last="Mandáková">Terezie Mandáková</name></region><name sortKey="Lysak, Martin A" sort="Lysak, Martin A" uniqKey="Lysak M" first="Martin A" last="Lysak">Martin A. Lysak</name></country><country name="France"><region name="Île-de-France"><name sortKey="Maumus, Florian" sort="Maumus, Florian" uniqKey="Maumus F" first="Florian" last="Maumus">Florian Maumus</name></region><name sortKey="Chen Min Tao, Romy" sort="Chen Min Tao, Romy" uniqKey="Chen Min Tao R" first="Romy" last="Chen-Min-Tao">Romy Chen-Min-Tao</name><name sortKey="Chica, Claudia" sort="Chica, Claudia" uniqKey="Chica C" first="Claudia" last="Chica">Claudia Chica</name><name sortKey="Colot, Vincent" sort="Colot, Vincent" uniqKey="Colot V" first="Vincent" last="Colot">Vincent Colot</name><name sortKey="Quesneville, Hadi" sort="Quesneville, Hadi" uniqKey="Quesneville H" first="Hadi" last="Quesneville">Hadi Quesneville</name><name sortKey="Roudier, Francois" sort="Roudier, Francois" uniqKey="Roudier F" first="François" last="Roudier">François Roudier</name><name sortKey="Szarzynska, Bogna" sort="Szarzynska, Bogna" uniqKey="Szarzynska B" first="Bogna" last="Szarzynska">Bogna Szarzynska</name><name sortKey="Zytnicki, Matthias" sort="Zytnicki, Matthias" uniqKey="Zytnicki M" first="Matthias" last="Zytnicki">Matthias Zytnicki</name></country><country name="Espagne"><region name="Communauté de Madrid"><name sortKey="De Lorenzo, Laura" sort="De Lorenzo, Laura" uniqKey="De Lorenzo L" first="Laura" last="De Lorenzo">Laura De Lorenzo</name></region><name sortKey="Alonso Blanco, Carlos" sort="Alonso Blanco, Carlos" uniqKey="Alonso Blanco C" first="Carlos" last="Alonso-Blanco">Carlos Alonso-Blanco</name><name sortKey="Barrero Sicilia, Cristina" sort="Barrero Sicilia, Cristina" uniqKey="Barrero Sicilia C" first="Cristina" last="Barrero-Sicilia">Cristina Barrero-Sicilia</name><name sortKey="Carbonero, Pilar" sort="Carbonero, Pilar" uniqKey="Carbonero P" first="Pilar" last="Carbonero">Pilar Carbonero</name><name sortKey="Iglesias Fernandez, Raquel" sort="Iglesias Fernandez, Raquel" uniqKey="Iglesias Fernandez R" first="Raquel" last="Iglesias-Fernández">Raquel Iglesias-Fernández</name><name sortKey="Mateos, Isabel" sort="Mateos, Isabel" uniqKey="Mateos I" first="Isabel" last="Mateos">Isabel Mateos</name><name sortKey="Paz Ares, Javier" sort="Paz Ares, Javier" uniqKey="Paz Ares J" first="Javier" last="Paz-Ares">Javier Paz-Ares</name></country><country name="États-Unis"><region name="Pennsylvanie"><name sortKey="Schuster, Stephan C" sort="Schuster, Stephan C" uniqKey="Schuster S" first="Stephan C" last="Schuster">Stephan C. Schuster</name></region></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Exploration/RBID.i -Sk "pubmed:27246759" \
| HfdSelect -Kh $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd \
| NlmPubMed2Wicri -a AustralieFrV1
| This area was generated with Dilib version V0.6.33. |  |